/cemt/A36015_3_lane_gembs

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SAMPLE A36015_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1189630046 100.00 % 594815023 100.00 % 594815023 100.00 %
General Reads 1171926327 98.51 % 588343593 98.91 % 583582734 98.11 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 162564 0.01 % 81592 0.01 % 80972 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 17541155 1.47 % 6389838 1.07 % 11151317 1.87 %
Bisulfite_reads C2T 595230964 50.03 % 298771936 50.23 % 296459028 49.84 %
Bisulfite_reads G2A 576857927 48.49 % 289653249 48.70 % 287204678 48.28 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 478103101
Average Unique 80.38 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 59411330132 39.64 % 27301866217 36.43 % 32109463915 42.84 %
Base Counts Overall C 14721861941 9.82 % 596099553 0.80 % 14125762388 18.85 %
Base Counts Overall G 15013092350 10.02 % 14361251915 19.16 % 651840435 0.87 %
Base Counts Overall T 58995037744 39.36 % 32091081695 42.82 % 26903956049 35.90 %
Base Counts Overall N 1752063629 1.17 % 596393518 0.80 % 1155670111 1.54 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9938437854754716
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 537667304



Mapping Quality

Mapping Quality Histogram
A36015_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36015_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C415FANXX_8_1
C62GPANXX_4_1
C62GPANXX_3_1