/cemt/mapping_coverage/A36015_3_lane_gembs
BACK
SAMPLE A36015_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1158817464 |
100% |
123461365584 |
100% |
| Mapped |
1145519557 |
98.85 % |
121799127209 |
98.65 % |
| Passed |
935280617 |
80.71 % |
95519259709 |
77.37 % |
| NotPassed |
210238940 |
18.14 % |
26279867500 |
21.29 % |
| |
|
|
|
|
| LowMAPQ |
155366164 |
13.41 % |
19420770500 |
15.73 % |
| MateUnmapped |
13297907 |
1.15 % |
1662238375 |
1.35 % |
| Duplicate |
13213736 |
1.14 % |
1651717000 |
1.34 % |
| BadOrientation |
390 |
0.00 % |
48750 |
0.00 % |
| LargeInsertSize |
16356 |
0.00 % |
2044500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
41642294 |
3.59 % |
5205286750 |
4.22 % |
| Unmapped |
13297907 |
1.15 % |
1662238375 |
1.35 % |
Base Level Counts
| Bases |
# |
% |
| Total |
116893727000 |
100% |
| Passed |
90977254618 |
77.83 % |
| Trimmed |
4082528645 |
3.49 % |
| Clipped |
386930031 |
0.33 % |
| Overlapping |
20987537260 |
17.95 % |
| LowQuality |
459476446 |
0.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |