/cemt/A34003_3_lane_gembs

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SAMPLE A34003_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1095234236 100.00 % 547617118 100.00 % 547617118 100.00 %
General Reads 1082802113 98.86 % 543202340 99.19 % 539599773 98.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 441485 0.04 % 221210 0.04 % 220275 0.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11990638 1.09 % 4193568 0.77 % 7797070 1.42 %
Bisulfite_reads C2T 554061074 50.59 % 277919323 50.75 % 276141751 50.43 %
Bisulfite_reads G2A 529182524 48.32 % 265504227 48.48 % 263678297 48.15 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 446998865
Average Unique 81.63 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43550978385 39.37 % 17526232965 31.69 % 26024745420 47.05 %
Base Counts Overall C 11275172318 10.19 % 372972172 0.67 % 10902200146 19.71 %
Base Counts Overall G 11481511080 10.38 % 11093213966 20.06 % 388297114 0.70 %
Base Counts Overall T 43199915153 39.05 % 25762415110 46.58 % 17437500043 31.53 %
Base Counts Overall N 1111080900 1.00 % 554494705 1.00 % 556586195 1.01 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9958459819936462
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 508145453



Mapping Quality

Mapping Quality Histogram
A34003_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A34003_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C34B4ACXX_3_1
C34B4ACXX_4_1
C2MPGACXX_7_1