/cemt/mapping_coverage/A34003_3_lane_gembs
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SAMPLE A34003_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1075741002 |
100% |
86579390332 |
100% |
| Mapped |
1066573858 |
99.15 % |
85662675932 |
98.94 % |
| Passed |
887299977 |
82.48 % |
67735287832 |
78.23 % |
| NotPassed |
179273881 |
16.67 % |
17927388100 |
20.71 % |
| |
|
|
|
|
| LowMAPQ |
149491986 |
13.90 % |
14949198600 |
17.27 % |
| MateUnmapped |
9167144 |
0.85 % |
916714400 |
1.06 % |
| Duplicate |
7118152 |
0.66 % |
711815200 |
0.82 % |
| BadOrientation |
126 |
0.00 % |
12600 |
0.00 % |
| LargeInsertSize |
5656 |
0.00 % |
565600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
22657961 |
2.11 % |
2265796100 |
2.62 % |
| Unmapped |
9167144 |
0.85 % |
916714400 |
1.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
88727444000 |
100% |
| Passed |
63020823146 |
71.03 % |
| Trimmed |
3700088202 |
4.17 % |
| Clipped |
105377434 |
0.12 % |
| Overlapping |
20886778734 |
23.54 % |
| LowQuality |
1014376484 |
1.14 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |