/cemt/methylation/A34003_3_lane_gembs

BACK

SAMPLE A34003_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26607868 17161099 64.50 %
NonRefCpG 263144 139062 52.85 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A34003_3_lane_gembs_coverage_refCpG.png ./IMG//A34003_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A34003_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A34003_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A34003_3_lane_gembs_quality_refcpg.png ./IMG//A34003_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A34003_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 11795822 22.85 % 6533223 16.87 % 131793 26.45 % 64626 19.48 %
Intermediate (0.3-0.7) 11905295 23.06 % 7696564 19.88 % 121605 24.40 % 68825 20.75 %
Methylated (0.7-1) 27922066 54.09 % 24494952 63.25 % 244947 49.15 % 198313 59.78 %
Median Methylation 0.740 0.810 0.680 0.790