/CEMT/A36011_3_lane_gembs

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SAMPLE A36011_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1362726518 100.00 % 681363259 100.00 % 681363259 100.00 %
General Reads 1340736274 98.39 % 672530833 98.70 % 668205441 98.07 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 132380 0.01 % 66348 0.01 % 66032 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 21857864 1.60 % 8766078 1.29 % 13091786 1.92 %
Bisulfite_reads C2T 683845154 50.18 % 342967652 50.34 % 340877502 50.03 %
Bisulfite_reads G2A 657023500 48.21 % 329629529 48.38 % 327393971 48.05 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 548402374
Average Unique 80.49 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 68019029608 39.61 % 30509612783 35.54 % 37509416825 43.69 %
Base Counts Overall C 16954118100 9.87 % 756159264 0.88 % 16197958836 18.87 %
Base Counts Overall G 17103219711 9.96 % 16355529656 19.05 % 747690055 0.87 %
Base Counts Overall T 67809168370 39.49 % 37546962883 43.73 % 30262205487 35.25 %
Base Counts Overall N 1818005479 1.06 % 683506048 0.80 % 1134499431 1.32 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9929994127308924
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 617617594



Mapping Quality

Mapping Quality Histogram
A36011_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36011_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C415FANXX_6_2
C6HT8ANXX_2_2
C6HT8ANXX_3_2