/CEMT/mapping_coverage/A36011_3_lane_gembs
BACK
SAMPLE A36011_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1321193761 |
100% |
138729843995 |
100% |
| Mapped |
1305498985 |
98.81 % |
136767996995 |
98.59 % |
| Passed |
1063638257 |
80.51 % |
106535405995 |
76.79 % |
| NotPassed |
241860728 |
18.31 % |
30232591000 |
21.79 % |
| |
|
|
|
|
| LowMAPQ |
171261440 |
12.96 % |
21407680000 |
15.43 % |
| MateUnmapped |
15694776 |
1.19 % |
1961847000 |
1.41 % |
| Duplicate |
19635492 |
1.49 % |
2454436500 |
1.77 % |
| BadOrientation |
234 |
0.00 % |
29250 |
0.00 % |
| LargeInsertSize |
13698 |
0.00 % |
1712250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
50949864 |
3.86 % |
6368733000 |
4.59 % |
| Unmapped |
15694776 |
1.19 % |
1961847000 |
1.41 % |
Base Level Counts
| Bases |
# |
% |
| Total |
132945692000 |
100% |
| Passed |
101514459429 |
76.36 % |
| Trimmed |
4586269628 |
3.45 % |
| Clipped |
426488177 |
0.32 % |
| Overlapping |
25983797828 |
19.54 % |
| LowQuality |
434676938 |
0.33 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |