/CEMT/methylation/A36011_3_lane_gembs

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SAMPLE A36011_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26423696 14770915 55.90 %
NonRefCpG 330796 129004 39.00 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36011_3_lane_gembs_coverage_refCpG.png ./IMG//A36011_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36011_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36011_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36011_3_lane_gembs_quality_refcpg.png ./IMG//A36011_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36011_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8403418 17.05 % 3592150 10.89 % 166766 27.48 % 50906 15.29 %
Intermediate (0.3-0.7) 12916052 26.20 % 6984855 21.18 % 165924 27.34 % 78140 23.47 %
Methylated (0.7-1) 27972701 56.75 % 22397267 67.92 % 274156 45.18 % 203937 61.25 %
Median Methylation 0.760 0.840 0.630 0.800