/cemt/A34004_3_lane_gembs

BACK

SAMPLE A34004_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1100389494 100.00 % 550194747 100.00 % 550194747 100.00 %
General Reads 1084893104 98.59 % 544198307 98.91 % 540694797 98.27 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 552107 0.05 % 276586 0.05 % 275521 0.05 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 14944283 1.36 % 5719854 1.04 % 9224429 1.68 %
Bisulfite_reads C2T 555053887 50.44 % 278388208 50.60 % 276665679 50.29 %
Bisulfite_reads G2A 530391324 48.20 % 266086685 48.36 % 264304639 48.04 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 431558977
Average Unique 78.44 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43493263508 39.13 % 16778864873 30.19 % 26714398635 48.07 %
Base Counts Overall C 11422109917 10.28 % 407440235 0.73 % 11014669682 19.82 %
Base Counts Overall G 11665147118 10.50 % 11198945471 20.15 % 466201647 0.84 %
Base Counts Overall T 43174059195 38.85 % 26448115841 47.59 % 16725943354 30.10 %
Base Counts Overall N 1384759156 1.25 % 736303027 1.33 % 648456129 1.17 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9956813706644603
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 494685370



Mapping Quality

Mapping Quality Histogram
A34004_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A34004_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C34B4ACXX_5_2
C34B4ACXX_6_1
C2R88ACXX_7_1