/cemt/mapping_coverage/A34004_3_lane_gembs
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SAMPLE A34004_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1079460385 |
100% |
86172581327 |
100% |
| Mapped |
1068925653 |
99.02 % |
85119108127 |
98.78 % |
| Passed |
860768920 |
79.74 % |
64303434827 |
74.62 % |
| NotPassed |
208156733 |
19.28 % |
20815673300 |
24.16 % |
| |
|
|
|
|
| LowMAPQ |
180611544 |
16.73 % |
18061154400 |
20.96 % |
| MateUnmapped |
10534732 |
0.98 % |
1053473200 |
1.22 % |
| Duplicate |
5528635 |
0.51 % |
552863500 |
0.64 % |
| BadOrientation |
138 |
0.00 % |
13800 |
0.00 % |
| LargeInsertSize |
7816 |
0.00 % |
781600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
22008600 |
2.04 % |
2200860000 |
2.55 % |
| Unmapped |
10534732 |
0.98 % |
1053473200 |
1.22 % |
Base Level Counts
| Bases |
# |
% |
| Total |
86073886400 |
100% |
| Passed |
59757508978 |
69.43 % |
| Trimmed |
3568407244 |
4.15 % |
| Clipped |
161651289 |
0.19 % |
| Overlapping |
21608800284 |
25.10 % |
| LowQuality |
977518605 |
1.14 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |