/cemt/methylation/A34004_3_lane_gembs

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SAMPLE A34004_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26660568 18836350 70.65 %
NonRefCpG 254016 148886 58.61 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A34004_3_lane_gembs_coverage_refCpG.png ./IMG//A34004_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A34004_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A34004_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A34004_3_lane_gembs_quality_refcpg.png ./IMG//A34004_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A34004_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 12754998 24.38 % 8215574 19.70 % 125424 25.98 % 70513 20.73 %
Intermediate (0.3-0.7) 11829850 22.61 % 8476789 20.33 % 117280 24.29 % 71279 20.96 %
Methylated (0.7-1) 27740483 53.02 % 25011104 59.97 % 240078 49.73 % 198362 58.32 %
Median Methylation 0.730 0.790 0.690 0.780