{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 42943736, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 40676079, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 94.72, 
            "paired": 42943736, 
            "paired_qc_failed": 0, 
            "read1": 21471868, 
            "read1_qc_failed": 0, 
            "read2": 21471868, 
            "read2_qc_failed": 0, 
            "paired_properly": 38825055, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 90.41, 
            "with_itself": 39771457, 
            "with_itself_qc_failed": 0, 
            "singletons": 904622, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.11, 
            "diff_chroms": 711549, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 74438840, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 70461728, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 94.66, 
            "paired": 74438840, 
            "paired_qc_failed": 0, 
            "read1": 37219420, 
            "read1_qc_failed": 0, 
            "read2": 37219420, 
            "read2_qc_failed": 0, 
            "paired_properly": 63045742, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 84.69, 
            "with_itself": 67777268, 
            "with_itself_qc_failed": 0, 
            "singletons": 2684460, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 3.61, 
            "diff_chroms": 2894050, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 17235859, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 116662, 
            "paired_opt_dupes": 2685, 
            "dupes_pct": 0.006769
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 25565862, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 413905, 
            "paired_opt_dupes": 1303, 
            "dupes_pct": 0.01619
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 17235675, 
            "distinct_read_pairs": 17119014, 
            "one_read_pair": 17002986, 
            "two_read_pair": 115396, 
            "NRF": 0.993231, 
            "PBC1": 0.993222, 
            "PBC2": 147.344674
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 25565508, 
            "distinct_read_pairs": 25151609, 
            "one_read_pair": 24743478, 
            "two_read_pair": 402445, 
            "NRF": 0.98381, 
            "PBC1": 0.983773, 
            "PBC2": 61.482881
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 34238394, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 34238394, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 34238394, 
            "paired_qc_failed": 0, 
            "read1": 17119197, 
            "read1_qc_failed": 0, 
            "read2": 17119197, 
            "read2_qc_failed": 0, 
            "paired_properly": 34238394, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 34238394, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 50303914, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 50303914, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 50303914, 
            "paired_qc_failed": 0, 
            "read1": 25151957, 
            "read1_qc_failed": 0, 
            "read2": 25151957, 
            "read2_qc_failed": 0, 
            "paired_properly": 50303914, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 50303914, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 122902, 
        "Np": 0, 
        "N_opt": 122902, 
        "N_consv": 122902, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 265, 
            "corr_est_frag_len": 0.217233153433551, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2054608, 
            "argmin_corr": 1500, 
            "min_corr": 0.191811, 
            "NSC": 1.132537, 
            "RSC": 1.862463
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.457027606847
        }, 
        "rep1-pr1": {
            "FRiP": 0.412476501275
        }, 
        "rep1-pr2": {
            "FRiP": 0.412511725266
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.366051076306
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.104424716893, 
            "auc": 0.492991375637, 
            "ch_div": 0.480097005854, 
            "elbow_pt": 3.69549302603e-174, 
            "jsd": 0.746897092224, 
            "syn_auc": 0.506276928347, 
            "syn_elbow_pt": 0.183472428537, 
            "syn_jsd": 0.447210871668
        }
    ]
}
