/cemt/A34407_3_lane_gembs

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SAMPLE A34407_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1370930056 100.00 % 685465028 100.00 % 685465028 100.00 %
General Reads 1352440064 98.65 % 679071083 99.07 % 673368981 98.24 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 80128 0.01 % 40243 0.01 % 39885 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 18409864 1.34 % 6353702 0.93 % 12056162 1.76 %
Bisulfite_reads C2T 691198958 50.42 % 346989243 50.62 % 344209715 50.22 %
Bisulfite_reads G2A 661321234 48.24 % 332122083 48.45 % 329199151 48.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 562872701
Average Unique 82.12 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 68508028591 39.66 % 32278569523 37.37 % 36229459068 41.95 %
Base Counts Overall C 17089795025 9.89 % 657985313 0.76 % 16431809712 19.03 %
Base Counts Overall G 17159026459 9.93 % 16483138378 19.08 % 675888081 0.78 %
Base Counts Overall T 68452587046 39.63 % 36262208866 41.99 % 32190378180 37.27 %
Base Counts Overall N 1527749935 0.88 % 686691448 0.80 % 841058487 0.97 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.993454407157448
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 636253654



Mapping Quality

Mapping Quality Histogram
A34407_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A34407_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C62HTANXX_7_2
C46APANXX_5_1
C62HTANXX_8_1