/cemt/mapping_coverage/A34407_3_lane_gembs
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SAMPLE A34407_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1334127611 |
100% |
143243717754 |
100% |
| Mapped |
1318778383 |
98.85 % |
141325064254 |
98.66 % |
| Passed |
1094996482 |
82.08 % |
113352326629 |
79.13 % |
| NotPassed |
223781901 |
16.77 % |
27972737625 |
19.53 % |
| |
|
|
|
|
| LowMAPQ |
164204356 |
12.31 % |
20525544500 |
14.33 % |
| MateUnmapped |
15349228 |
1.15 % |
1918653500 |
1.34 % |
| Duplicate |
18354843 |
1.38 % |
2294355375 |
1.60 % |
| BadOrientation |
186 |
0.00 % |
23250 |
0.00 % |
| LargeInsertSize |
22842 |
0.00 % |
2855250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
41199674 |
3.09 % |
5149959250 |
3.60 % |
| Unmapped |
15349228 |
1.15 % |
1918653500 |
1.34 % |
Base Level Counts
| Bases |
# |
% |
| Total |
136864292875 |
100% |
| Passed |
108136856110 |
79.01 % |
| Trimmed |
4724901013 |
3.45 % |
| Clipped |
257185833 |
0.19 % |
| Overlapping |
23254780413 |
16.99 % |
| LowQuality |
490569506 |
0.36 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |