/cemt/methylation/A34407_3_lane_gembs

BACK

SAMPLE A34407_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26040615 12002371 46.09 %
NonRefCpG 276799 49274 17.80 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A34407_3_lane_gembs_coverage_refCpG.png ./IMG//A34407_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A34407_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A34407_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A34407_3_lane_gembs_quality_refcpg.png ./IMG//A34407_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A34407_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6185589 13.23 % 1779040 6.67 % 170109 34.47 % 29202 16.98 %
Intermediate (0.3-0.7) 13791681 29.50 % 6119173 22.94 % 153831 31.17 % 48551 28.24 %
Methylated (0.7-1) 26781155 57.28 % 18772181 70.39 % 169555 34.36 % 94192 54.78 %
Median Methylation 0.750 0.830 0.510 0.740