/cemt/A36012_3_lane_gembs

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SAMPLE A36012_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1321745744 100.00 % 660872872 100.00 % 660872872 100.00 %
General Reads 1301788782 98.49 % 653278569 98.85 % 648510213 98.13 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 90714 0.01 % 45517 0.01 % 45197 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 19866248 1.50 % 7548786 1.14 % 12317462 1.86 %
Bisulfite_reads C2T 661645991 50.06 % 331977391 50.23 % 329668600 49.88 %
Bisulfite_reads G2A 640233505 48.44 % 321346695 48.62 % 318886810 48.25 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 530090458
Average Unique 80.21 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 65826175790 39.53 % 29019305315 34.85 % 36806870475 44.20 %
Base Counts Overall C 16534102465 9.93 % 752202311 0.90 % 15781900154 18.95 %
Base Counts Overall G 16695172309 10.02 % 15943935616 19.15 % 751236693 0.90 %
Base Counts Overall T 65683429916 39.44 % 36891677169 44.30 % 28791752747 34.58 %
Base Counts Overall N 1801083264 1.08 % 662861461 0.80 % 1138221803 1.37 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9945286729194882
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 600018008



Mapping Quality

Mapping Quality Histogram
A36012_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36012_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C6HT8ANXX_5_1
C415FANXX_7_1
C6HT8ANXX_4_1