/cemt/mapping_coverage/A36012_3_lane_gembs
BACK
SAMPLE A36012_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1288127857 |
100% |
139371708515 |
100% |
| Mapped |
1272914720 |
98.82 % |
137470066390 |
98.64 % |
| Passed |
1038775379 |
80.64 % |
108202648765 |
77.64 % |
| NotPassed |
234139341 |
18.18 % |
29267417625 |
21.00 % |
| |
|
|
|
|
| LowMAPQ |
159847242 |
12.41 % |
19980905250 |
14.34 % |
| MateUnmapped |
15213137 |
1.18 % |
1901642125 |
1.36 % |
| Duplicate |
13690212 |
1.06 % |
1711276500 |
1.23 % |
| BadOrientation |
128 |
0.00 % |
16000 |
0.00 % |
| LargeInsertSize |
14028 |
0.00 % |
1753500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
60587731 |
4.70 % |
7573466375 |
5.43 % |
| Unmapped |
15213137 |
1.18 % |
1901642125 |
1.36 % |
Base Level Counts
| Bases |
# |
% |
| Total |
129838669875 |
100% |
| Passed |
103144728170 |
79.44 % |
| Trimmed |
4539507749 |
3.50 % |
| Clipped |
432924178 |
0.33 % |
| Overlapping |
21203096932 |
16.33 % |
| LowQuality |
518412846 |
0.40 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |