/cemt/methylation/A36012_3_lane_gembs

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SAMPLE A36012_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26701687 18708148 70.06 %
NonRefCpG 291989 168387 57.67 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36012_3_lane_gembs_coverage_refCpG.png ./IMG//A36012_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36012_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36012_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36012_3_lane_gembs_quality_refcpg.png ./IMG//A36012_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36012_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5041057 9.76 % 1572226 3.95 % 74479 13.62 % 17792 4.72 %
Intermediate (0.3-0.7) 10449663 20.23 % 6463778 16.22 % 115916 21.19 % 61158 16.21 %
Methylated (0.7-1) 36163411 70.01 % 31808933 79.83 % 356613 65.19 % 298232 79.07 %
Median Methylation 0.840 0.870 0.820 0.870