/cemt/A34408_3_lane_gembs

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SAMPLE A34408_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1350931854 100.00 % 675465927 100.00 % 675465927 100.00 %
General Reads 1332698691 98.65 % 668673448 98.99 % 664025243 98.31 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 158268 0.01 % 79565 0.01 % 78703 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 18074895 1.34 % 6712914 0.99 % 11361981 1.68 %
Bisulfite_reads C2T 680356953 50.36 % 341312100 50.53 % 339044853 50.19 %
Bisulfite_reads G2A 652500006 48.30 % 327440913 48.48 % 325059093 48.12 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 546854149
Average Unique 80.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 67708383576 39.78 % 31521423446 37.04 % 36186960130 42.52 %
Base Counts Overall C 16837659675 9.89 % 660422538 0.78 % 16177237137 19.01 %
Base Counts Overall G 17066484305 10.03 % 16302226184 19.15 % 764258121 0.90 %
Base Counts Overall T 67222443889 39.49 % 35947491600 42.24 % 31274952289 36.75 %
Base Counts Overall N 1382442159 0.81 % 677143034 0.80 % 705299125 0.83 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9934397774214381
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 618095882



Mapping Quality

Mapping Quality Histogram
A34408_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A34408_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C4154ANXX_6_1
C46APANXX_6_1
C4154ANXX_5_1