/cemt/A34408_3_lane_gembs/C4154ANXX_5_1

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SAMPLE A34408_3_lane_gembs LANE C4154ANXX_5_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 446038170 100.00 % 223019085 100.00 % 223019085 100.00 %
General Reads 440088621 98.67 % 220802546 99.01 % 219286075 98.33 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 51521 0.01 % 25876 0.01 % 25645 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5898028 1.32 % 2190663 0.98 % 3707365 1.66 %
Bisulfite_reads C2T 224656049 50.37 % 112697372 50.53 % 111958677 50.20 %
Bisulfite_reads G2A 215484093 48.31 % 108131050 48.49 % 107353043 48.14 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 180559444
Average Unique 80.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 22347130655 39.76 % 10402628091 37.02 % 11944502564 42.51 %
Base Counts Overall C 5541248260 9.86 % 216065438 0.77 % 5325182822 18.95 %
Base Counts Overall G 5621013020 10.00 % 5370013925 19.11 % 250999095 0.89 %
Base Counts Overall T 22238495896 39.57 % 11887928507 42.31 % 10350567389 36.83 %
Base Counts Overall N 452921589 0.81 % 223768749 0.80 % 229152840 0.82 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9934697578834428
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 204126153



Mapping Quality

Mapping Quality Histogram
C4154ANXX_5_1.mapq.png



Read Length

Read Length Reads
125 223019085
125 223019085



Insert Size Plot

Insert Size Histogram
C4154ANXX_5_1.isize.png