/cemt/A34408_3_lane_gembs/C46APANXX_6_1

BACK

SAMPLE A34408_3_lane_gembs LANE C46APANXX_6_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 458151354 100.00 % 229075677 100.00 % 229075677 100.00 %
General Reads 451698195 98.59 % 226673483 98.95 % 225024712 98.23 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 54723 0.01 % 27531 0.01 % 27192 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 6398436 1.40 % 2374663 1.04 % 4023773 1.76 %
Bisulfite_reads C2T 230617615 50.34 % 115709700 50.51 % 114907915 50.16 %
Bisulfite_reads G2A 221135303 48.27 % 110991314 48.45 % 110143989 48.08 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 185361349
Average Unique 80.92 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 22959602264 39.77 % 10695103660 37.05 % 12264498604 42.49 %
Base Counts Overall C 5746635425 9.95 % 230649469 0.80 % 5515985956 19.11 %
Base Counts Overall G 5816442581 10.08 % 5553033869 19.24 % 263408712 0.91 %
Base Counts Overall T 22729457436 39.37 % 12155273641 42.11 % 10574183795 36.64 %
Base Counts Overall N 474932898 0.82 % 229474663 0.80 % 245458235 0.85 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9934092440227965
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 209452716



Mapping Quality

Mapping Quality Histogram
C46APANXX_6_1.mapq.png



Read Length

Read Length Reads
125 229075677
125 229075677



Insert Size Plot

Insert Size Histogram
C46APANXX_6_1.isize.png