/cemt/mapping_coverage/A34408_3_lane_gembs
BACK
SAMPLE A34408_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1288657009 |
100% |
134419290146 |
100% |
| Mapped |
1274033045 |
98.87 % |
132591294646 |
98.64 % |
| Passed |
1011358912 |
78.48 % |
99757028021 |
74.21 % |
| NotPassed |
262674133 |
20.38 % |
32834266625 |
24.43 % |
| |
|
|
|
|
| LowMAPQ |
182581074 |
14.17 % |
22822634250 |
16.98 % |
| MateUnmapped |
14623964 |
1.13 % |
1827995500 |
1.36 % |
| Duplicate |
44318220 |
3.44 % |
5539777500 |
4.12 % |
| BadOrientation |
448 |
0.00 % |
56000 |
0.00 % |
| LargeInsertSize |
21208 |
0.00 % |
2651000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
35753183 |
2.77 % |
4469147875 |
3.32 % |
| Unmapped |
14623964 |
1.13 % |
1827995500 |
1.36 % |
Base Level Counts
| Bases |
# |
% |
| Total |
126407662750 |
100% |
| Passed |
94975201081 |
75.13 % |
| Trimmed |
4262348187 |
3.37 % |
| Clipped |
249393371 |
0.20 % |
| Overlapping |
26401241358 |
20.89 % |
| LowQuality |
519478753 |
0.41 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |