/cemt/methylation/A34408_3_lane_gembs

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SAMPLE A34408_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26267235 13603576 51.79 %
NonRefCpG 243306 52217 21.46 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A34408_3_lane_gembs_coverage_refCpG.png ./IMG//A34408_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A34408_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A34408_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A34408_3_lane_gembs_quality_refcpg.png ./IMG//A34408_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A34408_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6067039 12.47 % 1768262 5.91 % 137760 31.31 % 24069 14.22 %
Intermediate (0.3-0.7) 12796002 26.31 % 6100822 20.40 % 130401 29.64 % 43306 25.59 %
Methylated (0.7-1) 29772475 61.22 % 22037154 73.69 % 171801 39.05 % 101845 60.18 %
Median Methylation 0.780 0.850 0.570 0.780