{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 46017494, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 41543333, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 90.28, 
            "paired": 46017494, 
            "paired_qc_failed": 0, 
            "read1": 23008747, 
            "read1_qc_failed": 0, 
            "read2": 23008747, 
            "read2_qc_failed": 0, 
            "paired_properly": 40239440, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 87.44, 
            "with_itself": 40868781, 
            "with_itself_qc_failed": 0, 
            "singletons": 674552, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.47, 
            "diff_chroms": 309520, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 65266666, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 62068581, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.1, 
            "paired": 65266666, 
            "paired_qc_failed": 0, 
            "read1": 32633333, 
            "read1_qc_failed": 0, 
            "read2": 32633333, 
            "read2_qc_failed": 0, 
            "paired_properly": 52881751, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 81.02, 
            "with_itself": 60433888, 
            "with_itself_qc_failed": 0, 
            "singletons": 1634693, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.5, 
            "diff_chroms": 5291648, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 17433032, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 237462, 
            "paired_opt_dupes": 2970, 
            "dupes_pct": 0.013621
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 20779273, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 269236, 
            "paired_opt_dupes": 2954, 
            "dupes_pct": 0.012957
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 17432370, 
            "distinct_read_pairs": 17194914, 
            "one_read_pair": 16960163, 
            "two_read_pair": 232072, 
            "NRF": 0.986378, 
            "PBC1": 0.986348, 
            "PBC2": 73.08147
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 20779235, 
            "distinct_read_pairs": 20509999, 
            "one_read_pair": 20243741, 
            "two_read_pair": 263299, 
            "NRF": 0.987043, 
            "PBC1": 0.987018, 
            "PBC2": 76.88499
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 34391140, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 34391140, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 34391140, 
            "paired_qc_failed": 0, 
            "read1": 17195570, 
            "read1_qc_failed": 0, 
            "read2": 17195570, 
            "read2_qc_failed": 0, 
            "paired_properly": 34391140, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 34391140, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 41020074, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 41020074, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 41020074, 
            "paired_qc_failed": 0, 
            "read1": 20510037, 
            "read1_qc_failed": 0, 
            "read2": 20510037, 
            "read2_qc_failed": 0, 
            "paired_properly": 41020074, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 41020074, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 135791, 
        "Np": 0, 
        "N_opt": 135791, 
        "N_consv": 135791, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 270, 
            "corr_est_frag_len": 0.194608137021224, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.1915421, 
            "argmin_corr": 1500, 
            "min_corr": 0.1738054, 
            "NSC": 1.11969, 
            "RSC": 1.172864
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.306321421555
        }, 
        "rep1-pr1": {
            "FRiP": 0.268718936309
        }, 
        "rep1-pr2": {
            "FRiP": 0.269718243429
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.176166859573
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.152930658549, 
            "auc": 0.49302165308, 
            "ch_div": 0.407674498577, 
            "elbow_pt": 1.1024000051e-175, 
            "jsd": 0.662202904578, 
            "syn_auc": 0.495974070698, 
            "syn_elbow_pt": 0.0883582249639, 
            "syn_jsd": 0.3583986284
        }
    ]
}
