/cemt/A36009_3_lane_gembs

BACK

SAMPLE A36009_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1490727234 100.00 % 745363617 100.00 % 745363617 100.00 %
General Reads 1465858499 98.33 % 736545467 98.82 % 729313032 97.85 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 166579 0.01 % 83695 0.01 % 82884 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24702156 1.66 % 8734455 1.17 % 15967701 2.14 %
Bisulfite_reads C2T 746389091 50.07 % 374980724 50.31 % 371408367 49.83 %
Bisulfite_reads G2A 719635987 48.27 % 361648438 48.52 % 357987549 48.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 599181639
Average Unique 80.39 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 74583176418 39.71 % 32278546858 34.37 % 42304629560 45.05 %
Base Counts Overall C 18594130715 9.90 % 739099709 0.79 % 17855031006 19.01 %
Base Counts Overall G 18808295180 10.01 % 18026740426 19.19 % 781554754 0.83 %
Base Counts Overall T 74142858810 39.47 % 42123325192 44.85 % 32019533618 34.09 %
Base Counts Overall N 1703170361 0.91 % 748103557 0.80 % 955066804 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9935237522263679
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 669515255



Mapping Quality

Mapping Quality Histogram
A36009_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36009_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C418TANXX_7_1
C46BBANXX_6_1
C418TANXX_8_1