/cemt/mapping_coverage/A36009_3_lane_gembs
BACK
SAMPLE A36009_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1456410706 |
100% |
152993474304 |
100% |
| Mapped |
1437771722 |
98.72 % |
150663601304 |
98.48 % |
| Passed |
1185693766 |
81.41 % |
119153856804 |
77.88 % |
| NotPassed |
252077956 |
17.31 % |
31509744500 |
20.60 % |
| |
|
|
|
|
| LowMAPQ |
175067822 |
12.02 % |
21883477750 |
14.30 % |
| MateUnmapped |
18638984 |
1.28 % |
2329873000 |
1.52 % |
| Duplicate |
9497145 |
0.65 % |
1187143125 |
0.78 % |
| BadOrientation |
180 |
0.00 % |
22500 |
0.00 % |
| LargeInsertSize |
13108 |
0.00 % |
1638500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
67499701 |
4.63 % |
8437462625 |
5.51 % |
| Unmapped |
18638984 |
1.28 % |
2329873000 |
1.52 % |
Base Level Counts
| Bases |
# |
% |
| Total |
148201698000 |
100% |
| Passed |
113587174627 |
76.64 % |
| Trimmed |
5004830553 |
3.38 % |
| Clipped |
329880553 |
0.22 % |
| Overlapping |
28717960643 |
19.38 % |
| LowQuality |
561851624 |
0.38 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |