/cemt/methylation/A36009_3_lane_gembs

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SAMPLE A36009_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26744430 17880705 66.86 %
NonRefCpG 290195 155322 53.52 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36009_3_lane_gembs_coverage_refCpG.png ./IMG//A36009_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36009_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36009_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36009_3_lane_gembs_quality_refcpg.png ./IMG//A36009_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36009_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10808965 20.90 % 6101185 15.46 % 141888 26.07 % 66490 18.13 %
Intermediate (0.3-0.7) 11983290 23.17 % 7786333 19.73 % 133959 24.62 % 77546 21.15 %
Methylated (0.7-1) 28922212 55.93 % 25574931 64.81 % 268340 49.31 % 222653 60.72 %
Median Methylation 0.760 0.830 0.690 0.810