/cemt/A36016_3_lane_gembs

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SAMPLE A36016_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1461552534 100.00 % 730776267 100.00 % 730776267 100.00 %
General Reads 1425642089 97.54 % 717090947 98.13 % 708551142 96.96 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 272959 0.02 % 137212 0.02 % 135747 0.02 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 35637486 2.44 % 13548108 1.85 % 22089378 3.02 %
Bisulfite_reads C2T 729929357 49.94 % 367155717 50.24 % 362773640 49.64 %
Bisulfite_reads G2A 695985691 47.62 % 350072442 47.90 % 345913249 47.34 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 544306160
Average Unique 74.48 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 72676572496 39.46 % 31158415609 33.84 % 41518156887 45.09 %
Base Counts Overall C 18368680251 9.97 % 882443264 0.96 % 17486236987 18.99 %
Base Counts Overall G 18725171265 10.17 % 17722685940 19.25 % 1002485325 1.09 %
Base Counts Overall T 72594229274 39.42 % 41582483559 45.16 % 31011745715 33.68 %
Base Counts Overall N 1790965998 0.97 % 731781270 0.79 % 1059184728 1.15 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9945137460616749
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 620534848



Mapping Quality

Mapping Quality Histogram
A36016_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36016_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C419NANXX_7_1
C62GPANXX_8_1
C62GPANXX_7_1