/cemt/mapping_coverage/A36016_3_lane_gembs
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SAMPLE A36016_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1417919972 |
100% |
148781359728 |
100% |
| Mapped |
1395103138 |
98.39 % |
145929255478 |
98.08 % |
| Passed |
1079925650 |
76.16 % |
106532069478 |
71.60 % |
| NotPassed |
315177488 |
22.23 % |
39397186000 |
26.48 % |
| |
|
|
|
|
| LowMAPQ |
247660342 |
17.47 % |
30957542750 |
20.81 % |
| MateUnmapped |
22816834 |
1.61 % |
2852104250 |
1.92 % |
| Duplicate |
7882197 |
0.56 % |
985274625 |
0.66 % |
| BadOrientation |
496 |
0.00 % |
62000 |
0.00 % |
| LargeInsertSize |
21588 |
0.00 % |
2698500 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
59612865 |
4.20 % |
7451608125 |
5.01 % |
| Unmapped |
22816834 |
1.61 % |
2852104250 |
1.92 % |
Base Level Counts
| Bases |
# |
% |
| Total |
134978340000 |
100% |
| Passed |
101445606937 |
75.16 % |
| Trimmed |
4596263605 |
3.41 % |
| Clipped |
464677249 |
0.34 % |
| Overlapping |
27981593273 |
20.73 % |
| LowQuality |
490198936 |
0.36 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |