/cemt/methylation/A36016_3_lane_gembs

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SAMPLE A36016_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26878593 19787308 73.62 %
NonRefCpG 293386 177511 60.50 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36016_3_lane_gembs_coverage_refCpG.png ./IMG//A36016_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36016_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36016_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36016_3_lane_gembs_quality_refcpg.png ./IMG//A36016_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36016_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5058375 9.70 % 1795746 4.29 % 72215 13.16 % 18772 4.77 %
Intermediate (0.3-0.7) 10073495 19.32 % 6652452 15.88 % 112553 20.51 % 62989 16.01 %
Methylated (0.7-1) 37015739 70.98 % 33443484 79.83 % 363884 66.32 % 311598 79.21 %
Median Methylation 0.840 0.870 0.820 0.870