{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 44955552, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 39480193, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 87.82, 
            "paired": 44955552, 
            "paired_qc_failed": 0, 
            "read1": 22477776, 
            "read1_qc_failed": 0, 
            "read2": 22477776, 
            "read2_qc_failed": 0, 
            "paired_properly": 37649212, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 83.75, 
            "with_itself": 38539651, 
            "with_itself_qc_failed": 0, 
            "singletons": 940542, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.09, 
            "diff_chroms": 393809, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 51927324, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 49878862, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 96.06, 
            "paired": 51927324, 
            "paired_qc_failed": 0, 
            "read1": 25963662, 
            "read1_qc_failed": 0, 
            "read2": 25963662, 
            "read2_qc_failed": 0, 
            "paired_properly": 47781548, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 92.02, 
            "with_itself": 49123727, 
            "with_itself_qc_failed": 0, 
            "singletons": 755135, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.45, 
            "diff_chroms": 883965, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 15963213, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 136474, 
            "paired_opt_dupes": 2216, 
            "dupes_pct": 0.008549
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 20969721, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 326676, 
            "paired_opt_dupes": 2745, 
            "dupes_pct": 0.015578
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 15962318, 
            "distinct_read_pairs": 15825854, 
            "one_read_pair": 15690757, 
            "two_read_pair": 133788, 
            "NRF": 0.991451, 
            "PBC1": 0.991464, 
            "PBC2": 117.28075
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 20965217, 
            "distinct_read_pairs": 20638613, 
            "one_read_pair": 20316429, 
            "two_read_pair": 317829, 
            "NRF": 0.984422, 
            "PBC1": 0.984389, 
            "PBC2": 63.922515
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 31653478, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 31653478, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 31653478, 
            "paired_qc_failed": 0, 
            "read1": 15826739, 
            "read1_qc_failed": 0, 
            "read2": 15826739, 
            "read2_qc_failed": 0, 
            "paired_properly": 31653478, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 31653478, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 41286090, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 41286090, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 41286090, 
            "paired_qc_failed": 0, 
            "read1": 20643045, 
            "read1_qc_failed": 0, 
            "read2": 20643045, 
            "read2_qc_failed": 0, 
            "paired_properly": 41286090, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 41286090, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 79153, 
        "Np": 0, 
        "N_opt": 79153, 
        "N_consv": 79153, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 280, 
            "corr_est_frag_len": 0.187844874453053, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2008958, 
            "argmin_corr": 1500, 
            "min_corr": 0.1720388, 
            "NSC": 1.091875, 
            "RSC": 0.5477382
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.216013524452
        }, 
        "rep1-pr1": {
            "FRiP": 0.195290314191
        }, 
        "rep1-pr2": {
            "FRiP": 0.196329120691
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.110779866919
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.193111831784, 
            "auc": 0.49272004008, 
            "ch_div": 0.315213675214, 
            "elbow_pt": 2.58605255955e-161, 
            "jsd": 0.615466586695, 
            "syn_auc": 0.49936620735, 
            "syn_elbow_pt": 0.0737915703701, 
            "syn_jsd": 0.320933149597
        }
    ]
}
