/cemt/A36014_3_lane_gembs

BACK

SAMPLE A36014_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1512617528 100.00 % 756308764 100.00 % 756308764 100.00 %
General Reads 1483318296 98.06 % 745426601 98.56 % 737891695 97.56 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 223033 0.01 % 112083 0.01 % 110950 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 29076199 1.92 % 10770080 1.42 % 18306119 2.42 %
Bisulfite_reads C2T 754876190 49.91 % 379299894 50.15 % 375576296 49.66 %
Bisulfite_reads G2A 728665139 48.17 % 366238790 48.42 % 362426349 47.92 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 591183975
Average Unique 78.17 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 75309649043 39.51 % 31917560692 33.49 % 43392088351 45.53 %
Base Counts Overall C 19083498871 10.01 % 954700989 1.00 % 18128797882 19.02 %
Base Counts Overall G 19195849652 10.07 % 18275245193 19.18 % 920604459 0.97 %
Base Counts Overall T 75123856537 39.42 % 43387387101 45.53 % 31736469436 33.30 %
Base Counts Overall N 1876954425 0.98 % 760010289 0.80 % 1116944136 1.17 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9938204294343242
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 665803158



Mapping Quality

Mapping Quality Histogram
A36014_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36014_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C62LRANXX_1_1
C62LRANXX_2_1
C419NANXX_5_1