/cemt/mapping_coverage/A36014_3_lane_gembs
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SAMPLE A36014_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1475179011 |
100% |
155561652853 |
100% |
| Mapped |
1453102621 |
98.50 % |
152802104103 |
98.23 % |
| Passed |
1172896230 |
79.51 % |
117776305228 |
75.71 % |
| NotPassed |
280206391 |
18.99 % |
35025798875 |
22.52 % |
| |
|
|
|
|
| LowMAPQ |
199464692 |
13.52 % |
24933086500 |
16.03 % |
| MateUnmapped |
22076390 |
1.50 % |
2759548750 |
1.77 % |
| Duplicate |
8210223 |
0.56 % |
1026277875 |
0.66 % |
| BadOrientation |
244 |
0.00 % |
30500 |
0.00 % |
| LargeInsertSize |
14120 |
0.00 % |
1765000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
72517112 |
4.92 % |
9064639000 |
5.83 % |
| Unmapped |
22076390 |
1.50 % |
2759548750 |
1.77 % |
Base Level Counts
| Bases |
# |
% |
| Total |
146600879125 |
100% |
| Passed |
112233988803 |
76.56 % |
| Trimmed |
4994735178 |
3.41 % |
| Clipped |
482610364 |
0.33 % |
| Overlapping |
28341963533 |
19.33 % |
| LowQuality |
547581247 |
0.37 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |