/cemt/methylation/A36014_3_lane_gembs

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SAMPLE A36014_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26805654 20285272 75.68 %
NonRefCpG 285923 178646 62.48 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36014_3_lane_gembs_coverage_refCpG.png ./IMG//A36014_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36014_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36014_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36014_3_lane_gembs_quality_refcpg.png ./IMG//A36014_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36014_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4999761 9.59 % 1910193 4.47 % 68203 12.75 % 18776 4.78 %
Intermediate (0.3-0.7) 10319828 19.80 % 7166281 16.76 % 111606 20.86 % 65712 16.74 %
Methylated (0.7-1) 36797083 70.61 % 33692544 78.78 % 355096 66.38 % 308090 78.48 %
Median Methylation 0.840 0.870 0.820 0.870