/cemt/A34042_3_lane_gembs

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SAMPLE A34042_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1508789018 100.00 % 754394509 100.00 % 754394509 100.00 %
General Reads 1477665932 97.94 % 741796981 98.33 % 735868951 97.54 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 97176 0.01 % 48714 0.01 % 48462 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 31025910 2.06 % 12548814 1.66 % 18477096 2.45 %
Bisulfite_reads C2T 755585811 50.08 % 379283419 50.28 % 376302392 49.88 %
Bisulfite_reads G2A 722177297 47.86 % 362562276 48.06 % 359615021 47.67 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 590661899
Average Unique 78.30 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 75430277086 39.68 % 33572953199 35.32 % 41857323887 44.04 %
Base Counts Overall C 18916687563 9.95 % 912679625 0.96 % 18004007938 18.94 %
Base Counts Overall G 18998865306 9.99 % 18080572915 19.02 % 918292391 0.97 %
Base Counts Overall T 75134543087 39.52 % 41731290723 43.90 % 33403252364 35.14 %
Base Counts Overall N 1627043226 0.86 % 756211672 0.80 % 870831554 0.92 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9935646106527909
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 668932220



Mapping Quality

Mapping Quality Histogram
A34042_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A34042_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C62HTANXX_5_1
C62HTANXX_6_1
C46APANXX_3_1