/cemt/mapping_coverage/A34042_3_lane_gembs
BACK
SAMPLE A34042_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1464732445 |
100% |
153875469578 |
100% |
| Mapped |
1444314677 |
98.61 % |
151323248578 |
98.34 % |
| Passed |
1162118725 |
79.34 % |
116048754578 |
75.42 % |
| NotPassed |
282195952 |
19.27 % |
35274494000 |
22.92 % |
| |
|
|
|
|
| LowMAPQ |
194570128 |
13.28 % |
24321266000 |
15.81 % |
| MateUnmapped |
20417768 |
1.39 % |
2552221000 |
1.66 % |
| Duplicate |
13004706 |
0.89 % |
1625588250 |
1.06 % |
| BadOrientation |
274 |
0.00 % |
34250 |
0.00 % |
| LargeInsertSize |
17192 |
0.00 % |
2149000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
74603652 |
5.09 % |
9325456500 |
6.06 % |
| Unmapped |
20417768 |
1.39 % |
2552221000 |
1.66 % |
Base Level Counts
| Bases |
# |
% |
| Total |
145255267000 |
100% |
| Passed |
110647484661 |
76.17 % |
| Trimmed |
4903142990 |
3.38 % |
| Clipped |
339644498 |
0.23 % |
| Overlapping |
28866867924 |
19.87 % |
| LowQuality |
498126927 |
0.34 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |