/cemt/methylation/A34042_3_lane_gembs

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SAMPLE A34042_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26612752 18800682 70.65 %
NonRefCpG 189649 64447 33.98 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A34042_3_lane_gembs_coverage_refCpG.png ./IMG//A34042_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A34042_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A34042_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A34042_3_lane_gembs_quality_refcpg.png ./IMG//A34042_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A34042_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4396228 8.60 % 1191244 3.02 % 78475 22.72 % 14616 8.17 %
Intermediate (0.3-0.7) 8892953 17.39 % 5230274 13.27 % 84017 24.33 % 32893 18.39 %
Methylated (0.7-1) 37850494 74.01 % 32999894 83.71 % 182850 52.95 % 131382 73.44 %
Median Methylation 0.860 0.890 0.720 0.850