/CEMT/A36002_3_lane_gembs

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SAMPLE A36002_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1288262436 100.00 % 644131218 100.00 % 644131218 100.00 %
General Reads 1237321552 96.05 % 620435109 96.32 % 616886443 95.77 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 68184 0.01 % 34188 0.01 % 33996 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 50872700 3.95 % 23661921 3.67 % 27210779 4.22 %
Bisulfite_reads C2T 629049435 48.83 % 315388147 48.96 % 313661288 48.70 %
Bisulfite_reads G2A 608340301 47.22 % 305081150 47.36 % 303259151 47.08 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 501775742
Average Unique 77.90 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 63714800350 39.25 % 27687079281 34.11 % 36027721069 44.39 %
Base Counts Overall C 16752246453 10.32 % 1188624016 1.46 % 15563622437 19.18 %
Base Counts Overall G 16836617727 10.37 % 15625952334 19.25 % 1210665393 1.49 %
Base Counts Overall T 63678967109 39.23 % 36007425941 44.37 % 27671541168 34.09 %
Base Counts Overall N 1338435297 0.82 % 651451896 0.80 % 686983401 0.85 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9206075295008489
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 565320709



Mapping Quality

Mapping Quality Histogram
A36002_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36002_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C5L0PANXX_1_2
C62BEANXX_1_2
C6HT8ANXX_1_2