/CEMT/mapping_coverage/A36002_3_lane_gembs
BACK
SAMPLE A36002_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1230019552 |
100% |
133164668433 |
100% |
| Mapped |
1217536061 |
98.99 % |
131604232058 |
98.83 % |
| Passed |
994089503 |
80.82 % |
103673412308 |
77.85 % |
| NotPassed |
223446558 |
18.17 % |
27930819750 |
20.97 % |
| |
|
|
|
|
| LowMAPQ |
146864892 |
11.94 % |
18358111500 |
13.79 % |
| MateUnmapped |
12483491 |
1.01 % |
1560436375 |
1.17 % |
| Duplicate |
7319895 |
0.60 % |
914986875 |
0.69 % |
| BadOrientation |
116 |
0.00 % |
14500 |
0.00 % |
| LargeInsertSize |
12270 |
0.00 % |
1533750 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
69249385 |
5.63 % |
8656173125 |
6.50 % |
| Unmapped |
12483491 |
1.01 % |
1560436375 |
1.17 % |
Base Level Counts
| Bases |
# |
% |
| Total |
124251245375 |
100% |
| Passed |
98945988252 |
79.63 % |
| Trimmed |
4334550029 |
3.49 % |
| Clipped |
278543780 |
0.22 % |
| Overlapping |
20299289287 |
16.34 % |
| LowQuality |
392874027 |
0.32 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |