/CEMT/methylation/A36002_3_lane_gembs

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SAMPLE A36002_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26715992 19821183 74.19 %
NonRefCpG 294647 177479 60.23 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36002_3_lane_gembs_coverage_refCpG.png ./IMG//A36002_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36002_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36002_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36002_3_lane_gembs_quality_refcpg.png ./IMG//A36002_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36002_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 4018461 7.77 % 1369347 3.32 % 69962 12.67 % 16783 4.31 %
Intermediate (0.3-0.7) 8528971 16.49 % 5217941 12.64 % 99086 17.94 % 49476 12.70 %
Methylated (0.7-1) 39176953 75.74 % 34684993 84.04 % 383168 69.39 % 323296 82.99 %
Median Methylation 0.880 0.900 0.850 0.900