/cemt/A35999_3_lane_gembs

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SAMPLE A35999_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1478721040 100.00 % 739360520 100.00 % 739360520 100.00 %
General Reads 1442498849 97.55 % 725469711 98.12 % 717029138 96.98 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 111479 0.01 % 55984 0.01 % 55495 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 36110712 2.44 % 13834825 1.87 % 22275887 3.01 %
Bisulfite_reads C2T 738090856 49.91 % 371126205 50.20 % 366964651 49.63 %
Bisulfite_reads G2A 704519472 47.64 % 354399490 47.93 % 350119982 47.35 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 543284024
Average Unique 73.48 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 73842549420 39.63 % 32820624533 35.23 % 41021924887 44.03 %
Base Counts Overall C 18498106221 9.93 % 795068452 0.85 % 17703037769 19.00 %
Base Counts Overall G 18714650453 10.04 % 17825094252 19.13 % 889556201 0.95 %
Base Counts Overall T 73765379399 39.59 % 40977338996 43.99 % 32788040403 35.20 %
Base Counts Overall N 1498165547 0.80 % 741299287 0.80 % 756866260 0.81 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9938253665558018
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 619831624



Mapping Quality

Mapping Quality Histogram
A35999_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A35999_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C4154ANXX_8_1
C4154ANXX_7_1
C46APANXX_8_1