/cemt/mapping_coverage/A35999_3_lane_gembs
BACK
SAMPLE A35999_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1434159141 |
100% |
149303597450 |
100% |
| Mapped |
1410682302 |
98.36 % |
146368992575 |
98.03 % |
| Passed |
1076149754 |
75.04 % |
104552424075 |
70.03 % |
| NotPassed |
334532548 |
23.33 % |
41816568500 |
28.01 % |
| |
|
|
|
|
| LowMAPQ |
253888886 |
17.70 % |
31736110750 |
21.26 % |
| MateUnmapped |
23476839 |
1.64 % |
2934604875 |
1.97 % |
| Duplicate |
8515288 |
0.59 % |
1064411000 |
0.71 % |
| BadOrientation |
602 |
0.00 % |
75250 |
0.00 % |
| LargeInsertSize |
24584 |
0.00 % |
3073000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
72103188 |
5.03 % |
9012898500 |
6.04 % |
| Unmapped |
23476839 |
1.64 % |
2934604875 |
1.97 % |
Base Level Counts
| Bases |
# |
% |
| Total |
134509001000 |
100% |
| Passed |
99594929548 |
74.04 % |
| Trimmed |
4443358828 |
3.30 % |
| Clipped |
345024119 |
0.26 % |
| Overlapping |
29611552806 |
22.01 % |
| LowQuality |
514135699 |
0.38 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |