/cemt/methylation/A35999_3_lane_gembs

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SAMPLE A35999_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26669171 16200796 60.75 %
NonRefCpG 330011 144375 43.75 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A35999_3_lane_gembs_coverage_refCpG.png ./IMG//A35999_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A35999_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A35999_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A35999_3_lane_gembs_quality_refcpg.png ./IMG//A35999_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A35999_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7868194 15.59 % 3355968 9.46 % 154722 25.36 % 47403 13.30 %
Intermediate (0.3-0.7) 11729289 23.23 % 6561488 18.49 % 152199 24.94 % 73922 20.74 %
Methylated (0.7-1) 30885747 61.18 % 25566727 72.05 % 303251 49.70 % 235123 65.96 %
Median Methylation 0.800 0.860 0.690 0.840