/cemt/A36004_3_lane_gembs

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SAMPLE A36004_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1465737784 100.00 % 732868892 100.00 % 732868892 100.00 %
General Reads 1440279448 98.26 % 722074230 98.53 % 718205218 98.00 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 59798 0.00 % 29965 0.00 % 29833 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 25398538 1.73 % 10764697 1.47 % 14633841 2.00 %
Bisulfite_reads C2T 739334172 50.44 % 370668952 50.58 % 368665220 50.30 %
Bisulfite_reads G2A 701005074 47.83 % 351435243 47.95 % 349569831 47.70 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 588312237
Average Unique 80.28 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 73367118183 39.73 % 34070150061 36.90 % 39296968122 42.56 %
Base Counts Overall C 18425271482 9.98 % 746231827 0.81 % 17679039655 19.15 %
Base Counts Overall G 18481923965 10.01 % 17723146979 19.19 % 758776986 0.82 %
Base Counts Overall T 72883487843 39.46 % 39068232245 42.31 % 33815255598 36.62 %
Base Counts Overall N 1525159311 0.83 % 733719280 0.79 % 791440031 0.86 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9946468429516012
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 672233696



Mapping Quality

Mapping Quality Histogram
A36004_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36004_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C6HN2ANXX_2_1
C6HN2ANXX_1_1
C46BBANXX_4_1