{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 30779182, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 29284376, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 95.14, 
            "paired": 30779182, 
            "paired_qc_failed": 0, 
            "read1": 15389591, 
            "read1_qc_failed": 0, 
            "read2": 15389591, 
            "read2_qc_failed": 0, 
            "paired_properly": 28350834, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 92.11, 
            "with_itself": 28838846, 
            "with_itself_qc_failed": 0, 
            "singletons": 445530, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 1.45, 
            "diff_chroms": 371520, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 45100544, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 42784977, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 94.87, 
            "paired": 45100544, 
            "paired_qc_failed": 0, 
            "read1": 22550272, 
            "read1_qc_failed": 0, 
            "read2": 22550272, 
            "read2_qc_failed": 0, 
            "paired_properly": 34886479, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 77.35, 
            "with_itself": 41495730, 
            "with_itself_qc_failed": 0, 
            "singletons": 1289247, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.86, 
            "diff_chroms": 4523333, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 12808790, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 132993, 
            "paired_opt_dupes": 2717, 
            "dupes_pct": 0.010383
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 13208684, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 154251, 
            "paired_opt_dupes": 1783, 
            "dupes_pct": 0.011678
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 12808729, 
            "distinct_read_pairs": 12675736, 
            "one_read_pair": 12543773, 
            "two_read_pair": 130944, 
            "NRF": 0.989617, 
            "PBC1": 0.989589, 
            "PBC2": 95.794943
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 13208667, 
            "distinct_read_pairs": 13054416, 
            "one_read_pair": 12901708, 
            "two_read_pair": 151186, 
            "NRF": 0.988322, 
            "PBC1": 0.988302, 
            "PBC2": 85.336658
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 25351594, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 25351594, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 25351594, 
            "paired_qc_failed": 0, 
            "read1": 12675797, 
            "read1_qc_failed": 0, 
            "read2": 12675797, 
            "read2_qc_failed": 0, 
            "paired_properly": 25351594, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 25351594, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 26108866, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 26108866, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 26108866, 
            "paired_qc_failed": 0, 
            "read1": 13054433, 
            "read1_qc_failed": 0, 
            "read2": 13054433, 
            "read2_qc_failed": 0, 
            "paired_properly": 26108866, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 26108866, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 101062, 
        "Np": 0, 
        "N_opt": 101062, 
        "N_consv": 101062, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 14319332, 
            "est_frag_len": 255, 
            "corr_est_frag_len": 0.267370172178489, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.239595, 
            "argmin_corr": 1500, 
            "min_corr": 0.2080152, 
            "NSC": 1.28534, 
            "RSC": 1.879523
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.594327185419
        }, 
        "rep1-pr1": {
            "FRiP": 0.571015915762
        }, 
        "rep1-pr2": {
            "FRiP": 0.571765615819
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.546639579745
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.0591833187395, 
            "auc": 0.491854671295, 
            "ch_div": 0.606576911235, 
            "elbow_pt": 1.41545576443e-128, 
            "jsd": 0.831512633604, 
            "syn_auc": 0.513256750256, 
            "syn_elbow_pt": 0.266988035909, 
            "syn_jsd": 0.535065412524
        }
    ]
}
