/cemt/A36010_3_lane_gembs

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SAMPLE A36010_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1418983912 100.00 % 709491956 100.00 % 709491956 100.00 %
General Reads 1390486839 97.99 % 697660649 98.33 % 692826190 97.65 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 141153 0.01 % 70748 0.01 % 70405 0.01 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28355920 2.00 % 11760559 1.66 % 16595361 2.34 %
Bisulfite_reads C2T 713120825 50.26 % 357808319 50.43 % 355312506 50.08 %
Bisulfite_reads G2A 677507167 47.75 % 339923078 47.91 % 337584089 47.58 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 561187278
Average Unique 79.10 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70882088426 39.65 % 31270631318 34.98 % 39611457108 44.31 %
Base Counts Overall C 17663924454 9.88 % 676307072 0.76 % 16987617382 19.00 %
Base Counts Overall G 17758923878 9.93 % 17131024661 19.16 % 627899217 0.70 %
Base Counts Overall T 70601006483 39.49 % 39607092179 44.31 % 30993914304 34.67 %
Base Counts Overall N 1886029671 1.05 % 710931226 0.80 % 1175098445 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9932169919522293
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 637520150



Mapping Quality

Mapping Quality Histogram
A36010_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A36010_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C6HN2ANXX_8_1
C415FANXX_5_1
C6HN2ANXX_7_1