/cemt/mapping_coverage/A36010_3_lane_gembs
BACK
SAMPLE A36010_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1379691329 |
100% |
145657767799 |
100% |
| Mapped |
1360905310 |
98.64 % |
143309515424 |
98.39 % |
| Passed |
1107202017 |
80.25 % |
111596603799 |
76.62 % |
| NotPassed |
253703293 |
18.39 % |
31712911625 |
21.77 % |
| |
|
|
|
|
| LowMAPQ |
189768096 |
13.75 % |
23721012000 |
16.29 % |
| MateUnmapped |
18786019 |
1.36 % |
2348252375 |
1.61 % |
| Duplicate |
10866779 |
0.79 % |
1358347375 |
0.93 % |
| BadOrientation |
292 |
0.00 % |
36500 |
0.00 % |
| LargeInsertSize |
17502 |
0.00 % |
2187750 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
53050624 |
3.85 % |
6631328000 |
4.55 % |
| Unmapped |
18786019 |
1.36 % |
2348252375 |
1.61 % |
Base Level Counts
| Bases |
# |
% |
| Total |
138388514625 |
100% |
| Passed |
106268304445 |
76.79 % |
| Trimmed |
4863821825 |
3.51 % |
| Clipped |
427091777 |
0.31 % |
| Overlapping |
26364819049 |
19.05 % |
| LowQuality |
464477529 |
0.34 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |