/cemt/methylation/A36010_3_lane_gembs

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SAMPLE A36010_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26733466 14381271 53.80 %
NonRefCpG 303322 125837 41.49 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A36010_3_lane_gembs_coverage_refCpG.png ./IMG//A36010_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A36010_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A36010_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A36010_3_lane_gembs_quality_refcpg.png ./IMG//A36010_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A36010_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 15700765 30.67 % 8539833 24.87 % 211078 37.12 % 96981 29.24 %
Intermediate (0.3-0.7) 14044884 27.44 % 8232102 23.98 % 159084 27.98 % 84358 25.44 %
Methylated (0.7-1) 21444902 41.89 % 17561514 51.15 % 198457 34.90 % 150294 45.32 %
Median Methylation 0.590 0.710 0.480 0.630