{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 73088098, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 67996189, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 93.03, 
            "paired": 73088098, 
            "paired_qc_failed": 0, 
            "read1": 36544049, 
            "read1_qc_failed": 0, 
            "read2": 36544049, 
            "read2_qc_failed": 0, 
            "paired_properly": 64504010, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 88.26, 
            "with_itself": 66526687, 
            "with_itself_qc_failed": 0, 
            "singletons": 1469502, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 2.01, 
            "diff_chroms": 1352542, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 46329162, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 42236466, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 91.17, 
            "paired": 46329162, 
            "paired_qc_failed": 0, 
            "read1": 23164581, 
            "read1_qc_failed": 0, 
            "read2": 23164581, 
            "read2_qc_failed": 0, 
            "paired_properly": 32074059, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 69.23, 
            "with_itself": 40063460, 
            "with_itself_qc_failed": 0, 
            "singletons": 2173006, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 4.69, 
            "diff_chroms": 5498059, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 27984447, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 185804, 
            "paired_opt_dupes": 4335, 
            "dupes_pct": 0.00664
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 0, 
            "paired_reads": 11378400, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 0, 
            "paired_dupes": 199707, 
            "paired_opt_dupes": 452, 
            "dupes_pct": 0.017551
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 27983255, 
            "distinct_read_pairs": 27797462, 
            "one_read_pair": 27612706, 
            "two_read_pair": 183723, 
            "NRF": 0.993361, 
            "PBC1": 0.993353, 
            "PBC2": 150.295314
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 11378350, 
            "distinct_read_pairs": 11178645, 
            "one_read_pair": 10981955, 
            "two_read_pair": 193728, 
            "NRF": 0.982449, 
            "PBC1": 0.982405, 
            "PBC2": 56.687495
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 55597286, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 55597286, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 55597286, 
            "paired_qc_failed": 0, 
            "read1": 27798643, 
            "read1_qc_failed": 0, 
            "read2": 27798643, 
            "read2_qc_failed": 0, 
            "paired_properly": 55597286, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 55597286, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 22357386, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 22357386, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 22357386, 
            "paired_qc_failed": 0, 
            "read1": 11178693, 
            "read1_qc_failed": 0, 
            "read2": 11178693, 
            "read2_qc_failed": 0, 
            "paired_properly": 22357386, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 100.0, 
            "with_itself": 22357386, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 90708, 
        "Np": 0, 
        "N_opt": 90708, 
        "N_consv": 90708, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 240, 
            "corr_est_frag_len": 0.207293427672601, 
            "phantom_peak": 50, 
            "corr_phantom_peak": 0.2041437, 
            "argmin_corr": 1500, 
            "min_corr": 0.186496, 
            "NSC": 1.111517, 
            "RSC": 1.178478
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.243792185056
        }, 
        "rep1-pr1": {
            "FRiP": 0.260285849118
        }, 
        "rep1-pr2": {
            "FRiP": 0.260517596894
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.217630426116
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.142505658823, 
            "auc": 0.494498778547, 
            "ch_div": 0.354603761061, 
            "elbow_pt": 1.15564301513e-283, 
            "jsd": 0.685134092263, 
            "syn_auc": 0.495163944659, 
            "syn_elbow_pt": 0.131577172249, 
            "syn_jsd": 0.424183902444
        }
    ]
}
