/cemt/mapping_coverage/A36000_3_lane_gembs
BACK
SAMPLE A36000_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1503772286 |
100% |
156066223660 |
100% |
| Mapped |
1484213246 |
98.70 % |
153621343660 |
98.43 % |
| Passed |
1147587854 |
76.31 % |
111543169660 |
71.47 % |
| NotPassed |
336625392 |
22.39 % |
42078174000 |
26.96 % |
| |
|
|
|
|
| LowMAPQ |
259547132 |
17.26 % |
32443391500 |
20.79 % |
| MateUnmapped |
19559040 |
1.30 % |
2444880000 |
1.57 % |
| Duplicate |
6507092 |
0.43 % |
813386500 |
0.52 % |
| BadOrientation |
474 |
0.00 % |
59250 |
0.00 % |
| LargeInsertSize |
21938 |
0.00 % |
2742250 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
70548756 |
4.69 % |
8818594500 |
5.65 % |
| Unmapped |
19559040 |
1.30 % |
2444880000 |
1.57 % |
Base Level Counts
| Bases |
# |
% |
| Total |
143435890375 |
100% |
| Passed |
106185348916 |
74.03 % |
| Trimmed |
4800087832 |
3.35 % |
| Clipped |
359688518 |
0.25 % |
| Overlapping |
31533032197 |
21.98 % |
| LowQuality |
557732912 |
0.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |